PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00047069-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 237aa    MW: 26792.9 Da    PI: 5.0311
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00047069-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.67.5e-0924502753
               AP2 27 krkrfslgkfgtaeeAakaaiaarkkl 53
                      +++r++lg+f tae+Aa+a+++a+  +
  PSME_00047069-RA 24 RKTRVWLGTFQTAEDAARAYDEAAVIM 50
                      359********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.167161IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-101062IPR016177DNA-binding domain
SMARTSM003802.5E-91367IPR001471AP2/ERF domain
PfamPF008473.5E-42447IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-162461IPR001471AP2/ERF domain
CDDcd000182.64E-142563No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
ARSDKGSFSW YRRYAGLPGI LAVRKTRVWL GTFQTAEDAA RAYDEAAVIM CGPQHAKTNF  60
TYDPSAPPSG KPSFLSAALT AKLRRFSLAS FNIEMQKGAA NKDHLQSPVM TPCLTRLRLD  120
KEKTNLENPS ESNWVMTVKF GRCSDQYQQP SLKQEETEDD IALEMIKELF HPTSIEFSCQ  180
SDTSDRSNGE NVTVEFDRCS DYQRHSLKQE TEDDIAAEMI EELFHPSSIE FSSQLNN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NPV75e-29A9NPV7_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.14e-14ERF family protein