PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00047116-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 260aa    MW: 29656.1 Da    PI: 8.8413
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00047116-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-1267109754
                       HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ErrRR+++N+ + +Lr l+P+ +      K++Ka+iL  A+eY+ +L
  PSME_00047116-RA  67 VSERRRRQKMNKLLYTLRALVPNiS------KMDKASILADAIEYVEKL 109
                       57*********************66......**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.06E-1358114No hitNo description
SuperFamilySSF474592.36E-1759124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.29160109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1766120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-1666115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-1067109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MPHLEISRTV CFGGKSNREI LCAFIEYTIY RLHCNLGERS NKIYTMELAD ERSILRYRKP  60
KLSKNVVSER RRRQKMNKLL YTLRALVPNI SKMDKASILA DAIEYVEKLK QQVERAESDV  120
LSTNVSAAQS ADPRVHEETD SFTVRLDAAN KYGSDRKYHV QVEAHVVEES IVEVRIRCKQ  180
EHGILFHLTR ALESLPFRLK NVTFSTLNES LLLLNVVLQN DHCFPAMADC GVRQSIEDSF  240
GKQGLILTSG MSNGHLCGRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-14661211065Transcription factor MYC2
5gnj_B4e-14661211065Transcription factor MYC2
5gnj_E4e-14661211065Transcription factor MYC2
5gnj_F4e-14661211065Transcription factor MYC2
5gnj_G4e-14661211065Transcription factor MYC2
5gnj_I4e-14661211065Transcription factor MYC2
5gnj_M4e-14661211065Transcription factor MYC2
5gnj_N4e-14661211065Transcription factor MYC2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1151110.0BT115111.1 Picea glauca clone GQ03609_I03 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.11e-18FER-like regulator of iron uptake