PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00047139-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 319aa    MW: 35216.5 Da    PI: 7.1785
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00047139-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.2e-09162210555
                       HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       h+ +Er+RRd +++  ++L +llP+     ++++   ++ L + ++YI++L+
  PSME_00047139-RA 162 HKLVERQRRDTMKTLCSTLISLLPEeY---HKTRHAMSDQLLESIKYIHHLE 210
                       99***********************66...9999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.874157209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-10161225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-9161223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.78E-9162213No hitNo description
PfamPF000102.5E-6162210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEDLWRRSYR DPSEPSSSSQ ATASLPHYHG NMDTSEGIQI RTAIKSVKFG ESGNDIDVDA  60
TAAKVFDAFS TKRPHDYGLL GTASSGPVMQ LDQTVDDDSS WAVKQCSQKI VANVGDQAQT  120
LTFNSLQADS LLNSRCRKKK AGREGGHDHM AKSLCTENGH VHKLVERQRR DTMKTLCSTL  180
ISLLPEEYHK TRHAMSDQLL ESIKYIHHLE NTLIEVQKKR GELSLSGTVK TFSNSSRVYE  240
NLPASQTCSP SHVPETLPTV RVSKVGSGIQ VTANTLSNQI DFSSLLLVLE EAGVEVVSAT  300
LFAINDRVFH SIYAKVFSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.19e-09bHLH family protein