PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00047222-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

WRKY

Protein Properties

Length: 404aa MW: 45204.6 Da PI: 6.5588

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00047222-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.2	1.9e-29	182	239	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 +Dg++WrKYGqK+ ++++ prsYYrC++a gCpvkk+v+r+aedp+++++tYeg+H+h PSME_00047222-RA 182 SDGCRWRKYGQKSTRNNPRPRSYYRCAMApGCPVKKQVQRCAEDPTILITTYEGNHTH 239 7*************************99************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.7E-32	170	239	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-26	174	240	IPR003657	WRKY domain
PROSITE profile	PS50811	27.175	176	242	IPR003657	WRKY domain
SMART	SM00774	7.4E-35	181	241	IPR003657	WRKY domain
Pfam	PF03106	1.3E-25	183	239	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MEGHRNKMTR LVAEINLMKE ENQNLKSMLK RMISDHHDLQ KQIRYQEKQH LTSIDRRQIV 60 SPEHQIEDTI NFKILSPSSV NVDSDDAVSH QSNQSSDSHE PIREKDSNNT RIMNDQMIPS 120 NKRPINQLQL DHEFQNGMMN SCMDESPNKK HQVLSNGCRE QTPAAPKRIV SVRTSSEASV 180 ISDGCRWRKY GQKSTRNNPR PRSYYRCAMA PGCPVKKQVQ RCAEDPTILI TTYEGNHTHY 240 LTPLAMAAMH AGLSNQLMGE GMNGENFVAQ NQSIPFSNGC IARISTSSAF PTIILDLTDN 300 QQSNPGLQMQ PPHLEDGSFQ HFTDPLSNDI GQVLDQNQLG NYSSNIQDYV ASIQADPNFT 360 SALAVAIADY MVKLQGAPVQ AVPLSHIPAT QYCANDSTTE PCVD

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MEGHRNKMTR LVAEINLMKE ENQNLKSMLK RMISDHHDLQ KQIRYQEKQH LTSIDRRQIV  60
SPEHQIEDTI NFKILSPSSV NVDSDDAVSH QSNQSSDSHE PIREKDSNNT RIMNDQMIPS  120
NKRPINQLQL DHEFQNGMMN SCMDESPNKK HQVLSNGCRE QTPAAPKRIV SVRTSSEASV  180
ISDGCRWRKY GQKSTRNNPR PRSYYRCAMA PGCPVKKQVQ RCAEDPTILI TTYEGNHTHY  240
LTPLAMAAMH AGLSNQLMGE GMNGENFVAQ NQSIPFSNGC IARISTSSAF PTIILDLTDN  300
QQSNPGLQMQ PPHLEDGSFQ HFTDPLSNDI GQVLDQNQLG NYSSNIQDYV ASIQADPNFT  360
SALAVAIADY MVKLQGAPVQ AVPLSHIPAT QYCANDSTTE PCVD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-22	168	243	2	75	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT110411	3e-65	BT110411.1 Picea glauca clone GQ03221_F16 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A482CVK9	1e-129	A0A482CVK9_9SPER; WRKY164

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04450.1	1e-43	WRKY family protein