PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00047223-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family SBP
Protein Properties Length: 370aa    MW: 40095.3 Da    PI: 5.974
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00047223-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP521.9e-16571023778
                       TEEEEE-TTT....SSEEETTT--SS--S-STTTT-------S--- CS
               SBP  37 gleqrfCqqC....srfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       g e+ f q C    s fh lsefDe+krsCr+rLa+hn+rrrk+q+
  PSME_00047223-RA  57 GPEEHFSQYCekgrSLFHVLSEFDEGKRSCRKRLADHNRRRRKPQP 102
                       4467777877333456***************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114113.52814100IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.102.6E-45687IPR004333Transcription factor, SBP-box
PfamPF031108.7E-95699IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.88E-1356105IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGQGIAQDTE ERKPQMISAA GSAMDTIQYS GNGNGNRFHS HCSGRTQESH SGFDGHGPEE  60
HFSQYCEKGR SLFHVLSEFD EGKRSCRKRL ADHNRRRRKP QPNAVVTVSN TESSSALKNT  120
DQDQDTNSGS NQSSLQQPEQ ISRSEAPGLL TGISLSQSLP LVLQNSKGQE QYLQQTGPNL  180
SLGGEIALDY PRHSTGGENY NGLEIPIPWL RPSGSGSEFG GSEKNSSNGQ VSESGGGGSS  240
STVQVFTSIQ NLLPLQSSTE LGTSDWMVNA GNLSGSSNRG QHYGPADLNL QTSLEGQQML  300
SLLEKDVRSS NVDTDHHNTE DAVEYFSQHQ GLNSKHSVDG HSEHRNQLST SFSGIQSLRS  360
LSQSMYQNIL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18299KRSCRKRLADHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1005400.0BT100540.1 Picea glauca clone GQ0024_I12 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76580.11e-13SBP family protein