PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00047238-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 346aa MW: 38928 Da PI: 4.9342

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00047238-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	356.6	1e-109	135	339	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp+aflgpkcalwd rpaqg++w++dycs fh tla neg+pg++pvlrp+gidlkdg+lfaalsak+q k vgipece PSME_00047238-RA 135 PPPAAFLGPKCALWDFLRPAQGIKWCEDYCSDFHMTLASNEGAPGMRPVLRPGGIDLKDGPLFAALSAKTQEKAVGIPECE------------ 215 89****************************************************************************8............ PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 elfd+ +lege++rewlffdkpr fesgnrkqrslpdysgrgwhesrkqv+k+fgglkrsyymdpqps++fewhlyey+in++da+alyrle PSME_00047238-RA 216 ELFDMYVLEGESMREWLFFDKPRLDFESGNRKQRSLPDYSGRGWHESRKQVIKNFGGLKRSYYMDPQPSTQFEWHLYEYKINDCDACALYRLE 308 9**************************************************************************************** PP VOZ 187 lklvdekksakgkvskdsladlqkklgrlta 217 lk+v +kk++kgkv d+l+dlq++lg+l+a PSME_00047238-RA 309 LKMVCSKKNTKGKVGGDPLVDLQHQLGKLSA 339 ***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.70.330	2.7E-4	13	63	IPR012677	Nucleotide-binding alpha-beta plait domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000166	Molecular Function	nucleotide binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MFRSDVPISK VPFSVVPYVD YHMGAESGYV CFEQPEMVQK PRAVAVLAEE GGNSYPQTSV 60 QLPANIEHQE NNNYVQTSEQ FPPNLVEGSE VTSGLEGGQI NFHQDYIPAA QLIFTLTGEE 120 ETSPVFNGRQ PGLFPPPAAF LGPKCALWDF LRPAQGIKWC EDYCSDFHMT LASNEGAPGM 180 RPVLRPGGID LKDGPLFAAL SAKTQEKAVG IPECEELFDM YVLEGESMRE WLFFDKPRLD 240 FESGNRKQRS LPDYSGRGWH ESRKQVIKNF GGLKRSYYMD PQPSTQFEWH LYEYKINDCD 300 ACALYRLELK MVCSKKNTKG KVGGDPLVDL QHQLGKLSAE FSWVAK

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MFRSDVPISK VPFSVVPYVD YHMGAESGYV CFEQPEMVQK PRAVAVLAEE GGNSYPQTSV  60
QLPANIEHQE NNNYVQTSEQ FPPNLVEGSE VTSGLEGGQI NFHQDYIPAA QLIFTLTGEE  120
ETSPVFNGRQ PGLFPPPAAF LGPKCALWDF LRPAQGIKWC EDYCSDFHMT LASNEGAPGM  180
RPVLRPGGID LKDGPLFAAL SAKTQEKAVG IPECEELFDM YVLEGESMRE WLFFDKPRLD  240
FESGNRKQRS LPDYSGRGWH ESRKQVIKNF GGLKRSYYMD PQPSTQFEWH LYEYKINDCD  300
ACALYRLELK MVCSKKNTKG KVGGDPLVDL QHQLGKLSAE FSWVAK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010260370.1	1e-121	PREDICTED: transcription factor VOZ1
Swissprot	Q9SGQ0	1e-108	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A1U8A0G4	1e-119	A0A1U8A0G4_NELNU; transcription factor VOZ1
STRING	XP_010260370.1	1e-120	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-111	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]