PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00047283-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 760aa    MW: 83766.5 Da    PI: 7.0695
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00047283-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.7e-05166184321
                       ETTTTEEESSHHHHHHHHH CS
           zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                       C+ Cgk Fs++  L  H+r
  PSME_00047283-RA 166 CTECGKEFSSWKALFGHMR 184
                       ******************8 PP
2zf-C2H210.90.0014439461123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ C+k+F+++  L  H  +H
  PSME_00047283-RA 439 FECGTCKKVFRSHQALGGHRASH 461
                       89**************9999888 PP
3zf-C2H213.60.0002721744123
                       EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                       ++C+ C+k+  +   L+ Hi++ H
  PSME_00047283-RA 721 FQCNLCSKVVATMQALNDHIKKsH 744
                       89*******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.38E-7164186No hitNo description
PROSITE profilePS5015710.367164191IPR007087Zinc finger, C2H2
SMARTSM003550.0048164186IPR015880Zinc finger, C2H2-like
PfamPF139122.9E-8165188IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-4166186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
SuperFamilySSF576671.38E-7434461No hitNo description
PfamPF139121.7E-8439463IPR007087Zinc finger, C2H2
PROSITE profilePS501579.847439466IPR007087Zinc finger, C2H2
SMARTSM003550.31439461IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280441461IPR007087Zinc finger, C2H2
PfamPF139125.9E-12552576IPR007087Zinc finger, C2H2
SuperFamilySSF576675.7E-6552574No hitNo description
PROSITE profilePS501579.93552579IPR007087Zinc finger, C2H2
SMARTSM003550.13552574IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280554574IPR007087Zinc finger, C2H2
SuperFamilySSF576675.7E-6716741No hitNo description
PROSITE profilePS5015710.118721749IPR007087Zinc finger, C2H2
SMARTSM003550.01721744IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280723744IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
SKFQTGKPVS CSTPSPRCHF ISPVVNAGRG HVGGMLPRAD SSSVSQLKEG TRNLFGILDG  60
DRDSSTVHSA KTAPCSQDSS VVDDHQKNFK TGEWNNESSG TSTVMSEGEG KMNYKALCAL  120
RRNPKRRRNN GQMEDPCMAP SQPQQKPVVV TKKTNSMFLA EKARACTECG KEFSSWKALF  180
GHMRCHPERE WRGILPPQGV RQERETMMIM ANGSSSSSVP RPPVQVKFHS RQMHGQQQQG  240
VQRNKSYPPQ PTLEAHSELE SLDEKTEASD KLLREDSDTE SIETAYINEN DQDQKPQLGE  300
LMPAAKRSRR PKAALNVNSV EDETHGGMET AKNEGSPAST PREIREQRDM AHCLVMLSSA  360
ARPVDDESAF SDNRDGVAMT DERAESIESE TAKKFPWELV CYSKKEQSQS GNLELVLGND  420
IHVEAAGSVQ SSEIKQGGFE CGTCKKVFRS HQALGGHRAS HKKVKGCFAR TINAESGGVP  480
PEESFPDEEI ITTEDIMAKS DDDNNNNNTP RAEIAASEKL KLEDTIYKTP LQAPEFAAAA  540
EITKKTKASG GHQCSICSRV FSTGQALGGH KRCHWGAGDN SSKNEAAAAS INRPAVAVPA  600
IAHLQWQPKN VSTKGDFLDL NLPAPVEEEQ EEQMTDDQLQ PKFHPDVELR MCTASLESMK  660
RAGEFLSLSS GIDKKNSIKA EQNYNYQPQQ QQSRRKDPVD SQLRIQRTSS DMNLKYSSSL  720
FQCNLCSKVV ATMQALNDHI KKSHNVAAPQ PQFCLRDPPL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.16e-20C2H2-like zinc finger protein