PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00047341-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 194aa    MW: 21494 Da    PI: 10.5102
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00047341-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox491.1e-153393257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++R+ ++++q+++Le+  ++   +p +ee++++  +l    ++++ +V++WFqNr+a+ k+
  PSME_00047341-RA 33 KTRWHPKPDQIQILEAIVNSgMVNPPREEIKRIRGQLeefgHVEDVNVFYWFQNRKARVKR 93
                      89*****************99*************************************997 PP
2Wus_type_Homeobox103.41.5e-333295265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       a+tRW P+p+Qi+iLe++ +sG+++P++eei+ri+ +Lee+G++ed NVfyWFQNrkaR ++k+
   PSME_00047341-RA 32 AKTRWHPKPDQIQILEAIVNSGMVNPPREEIKRIRGQLEEFGHVEDVNVFYWFQNRKARVKRKR 95
                       689**********************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.1182994IPR001356Homeobox domain
SMARTSM003892.4E-43198IPR001356Homeobox domain
SuperFamilySSF466892.5E-103297IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-63398IPR009057Homeodomain-like
PfamPF000461.7E-133393IPR001356Homeobox domain
CDDcd000862.61E-43395No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MSRFNKNIFH TEGALSHNYV PEKERERTVP VAKTRWHPKP DQIQILEAIV NSGMVNPPRE  60
EIKRIRGQLE EFGHVEDVNV FYWFQNRKAR VKRKRQLQNA DKSESRAAKC ARPLSSSSSS  120
LTSTTSTSTS VQSQPVTIVN QAPSSSAGPV ISSFAGHHCN QQANQKMSTT QYSNIQSIGA  180
GGATESRGIL NEGT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086022.12e-30WUSCHEL-related homeobox 8-like isoform X1
RefseqXP_020551518.11e-30WUSCHEL-related homeobox 9-like isoform X2
TrEMBLR9R8673e-60R9R867_PICAB; WUSCHEL homeobox protein WOX8D
TrEMBLR9R8B62e-60R9R8B6_PICAB; WUSCHEL homeobox protein WOX8C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.12e-30homeobox-3