PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00047342-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 275aa    MW: 30651.5 Da    PI: 7.3233
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00047342-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.12e-153393257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++R+ ++++q+++Le+  ++   +p +ee++++  +l    ++++ +V++WFqNr+a+ k+
  PSME_00047342-RA 33 KTRWHPKPDQIQILEAIVNSgMVNPPREEIKRIRGQLeefgHVEDVNVFYWFQNRKARVKR 93
                      89*****************99*************************************997 PP
2Wus_type_Homeobox102.53e-333294264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       a+tRW P+p+Qi+iLe++ +sG+++P++eei+ri+ +Lee+G++ed NVfyWFQNrkaR ++k
   PSME_00047342-RA 32 AKTRWHPKPDQIQILEAIVNSGMVNPPREEIKRIRGQLEEFGHVEDVNVFYWFQNRKARVKRK 94
                       689**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.1182994IPR001356Homeobox domain
SMARTSM003892.4E-43198IPR001356Homeobox domain
SuperFamilySSF466895.26E-103297IPR009057Homeodomain-like
PfamPF000463.2E-133393IPR001356Homeobox domain
CDDcd000863.55E-53395No hitNo description
Gene3DG3DSA:1.10.10.605.1E-63399IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MSRFNKNIFH TEGALSHNYV PEKERERTVP VAKTRWHPKP DQIQILEAIV NSGMVNPPRE  60
EIKRIRGQLE EFGHVEDVNV FYWFQNRKAR VKRKRQLQNA EESESRAAKC ARPLSSSSSL  120
TSTTSTSTSV QSQPVTIVNQ APSSSAGPVI SSFAAHHCNQ QVNQKMSTTQ YSYIQPIGAG  180
GATESRGILN EGGVREDSIN IDNSVITVIV NDIAMQVPKE PINLGTFFGD DALLLDSSGH  240
MVQVNEWGFT MEGLEHGATY FLLYIMEKMH AKGYV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018728323.11e-44PREDICTED: WUSCHEL-related homeobox 9
TrEMBLR9R8674e-95R9R867_PICAB; WUSCHEL homeobox protein WOX8D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.11e-29homeobox-3