PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00047383-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 191aa    MW: 21193.4 Da    PI: 4.9314
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00047383-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.36.1e-162372255
               AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++kG+r +k +g+Wv+eIr        r r++lg+++t+e+Aa+a++ a  +l+g
  PSME_00047383-RA 23 QFKGIRMRK-WGKWVSEIRMsN----YRGRIWLGSYDTPEKAARAYDFAVYCLRG 72
                      69*****99.**********33....248********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.1E-282281IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-192381IPR016177DNA-binding domain
SMARTSM003801.3E-322386IPR001471AP2/ERF domain
CDDcd000182.73E-272382No hitNo description
PROSITE profilePS5103220.5472380IPR001471AP2/ERF domain
PfamPF008474.6E-92472IPR001471AP2/ERF domain
PRINTSPR003671.3E-82435IPR001471AP2/ERF domain
PRINTSPR003671.3E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MAKPSQNQNG HRKHENRSLI SRQFKGIRMR KWGKWVSEIR MSNYRGRIWL GSYDTPEKAA  60
RAYDFAVYCL RGSKARLNFP QTPPEIPFAS SLSPRRIQAA AAKYAAEEFP PPSEHAAFSS  120
SGSEAECGND GQENSAFSSS GSEVECGNDG QENSAFSDSV FEDVDNGENL TLQDFPLVDL  180
DVLMEEFGAL L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1523811473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9C5912e-35ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLB8LPP66e-64B8LPP6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.12e-34ERF family protein