PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00047393-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 224aa MW: 25439.4 Da PI: 6.7981

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00047393-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	272.7	4.7e-84	81	220	41	180
VOZ 41 eglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdys 133 g+p ++pvl p+gidlkdg+lfaalsak+q k vgipecegaatakspwna elfd+ +lege++rewlffdk rr fesgnrkqrslpdys PSME_00047393-RA 81 SGAPRMRPVLHPGGIDLKDGPLFAALSAKTQEKAVGIPECEGAATAKSPWNAYELFDMYVLEGESMREWLFFDKSRRDFESGNRKQRSLPDYS 173 47899************************************************************************************** PP VOZ 134 grgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldal 180 grgwhesrkqv+k+fgglkrsyymdpqps++fewhlyeyein++da+ PSME_00047393-RA 174 GRGWHESRKQVIKDFGGLKRSYYMDPQPSTHFEWHLYEYEINDCDAV 220 *******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MTGALQHTAG QSSAYSSSFL LRRVQTDSSH GFFLTIRSQE EEGEQYQIGR VFKSFREMAG 60 EKPKTGNVWN TVKPFVNGGA SGAPRMRPVL HPGGIDLKDG PLFAALSAKT QEKAVGIPEC 120 EGAATAKSPW NAYELFDMYV LEGESMREWL FFDKSRRDFE SGNRKQRSLP DYSGRGWHES 180 RKQVIKDFGG LKRSYYMDPQ PSTHFEWHLY EYEINDCDAV PYID

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT118531	4e-60	BT118531.1 Picea glauca clone GQ04007_G03 mRNA sequence.
GenBank	EF677286	4e-60	EF677286.1 Picea sitchensis clone WS02764_M18 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010904889.1	4e-81	transcription factor VOZ1
Refseq	XP_010916038.1	3e-81	transcription factor VOZ1 isoform X1
Refseq	XP_019705069.1	3e-81	transcription factor VOZ1 isoform X2
Swissprot	Q9SGQ0	1e-75	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A0K9NP50	2e-82	A0A0K9NP50_ZOSMR; Vascular plant one zinc finger protein
STRING	ERN14021	4e-80	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	5e-78	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]