PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00047525-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 412aa    MW: 44793.7 Da    PI: 4.9403
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00047525-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.5e-12219261855
                       HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        Er+RR r+N+++ +Lr+l+Pk      +K++Ka+i+  A+ Y+++Lq
  PSME_00047525-RA 219 SERKRRGRLNEKLYTLRSLVPKI-----TKMDKASIVGDAISYVQDLQ 261
                       5*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.656211260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-17216279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-16217266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-13218265No hitNo description
Gene3DG3DSA:4.10.280.105.8E-16218276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9219261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MEQRAGGVGT STAYTNNSSY GLGIFDFNGL ALMEAAAAAG DHTGLLLATD LVQGAGSPIP  60
ISSPSSSSHA VNLQGWNFAN TDDYLWTSHD LPAKVETFQP SPGPILDHGA AEVLTRNGTN  120
DQNLSAFPQS RAQAQAQAQA QAQVHASSFH SLGGPDLPCD PNGYGGSGTP AQGKVDTKFL  180
QAEPNYEYSS DEIDNLDEDD KSSKSSQYGR SSESKTLLSE RKRRGRLNEK LYTLRSLVPK  240
ITKMDKASIV GDAISYVQDL QKQVKDIQAE IEGLRSNPSY QNEPTPLEID NSAVSDLDNE  300
MQSYEEGNTN SYPPLPLPLP LLQTLDLDVT KVEDRTFHIR IYCQKSQGVL IRLMRALESI  360
QLDFHNANLT SFDGHIIKTA TVKIKKRYGL LEAEALRGII LDATSKQGFK TT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.35e-29bHLH family protein