PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00047675-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 135aa    MW: 15985.5 Da    PI: 7.5051
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00047675-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.66.5e-084580140
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtae 40
                      + ykG r    +g+Wv eIr+p++   + +++lg+f t++
  PSME_00047675-RA 45 PVYKGMRMLT-WGKWVFEIREPKK---KSSIWLGTFPTHD 80
                      679****888.**********854...6*********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.5754680IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-124680IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-84680IPR016177DNA-binding domain
SMARTSM003800.00246102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MPKCKSHKRR AMEINNADDY GKEDPAVCNH EDKQPRERVE RKRHPVYKGM RMLTWGKWVF  60
EIREPKKKSS IWLGTFPTHD MNEWMIIDDD VLFDLPNYLG NMTEALLVAP PWLFSIVGVR  120
DIVSFNYKDD LCMVL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LM172e-23B8LM17_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-18ERF family protein