PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00047759-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 342aa MW: 38328.2 Da PI: 6.6566

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00047759-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.2e-12	149	192	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + Er+RR ++N+++ +Lr+l+P +K++Ka++++ A+ YI++L+ PSME_00047759-RA 149 ISERKRRGKLNERLYTLRSLVPFI-----TKMDKASVVKDAIAYIHHLE 192 78*******************7.....6***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.942	142	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.93E-17	146	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.39E-13	146	196	No hit	No description
SMART	SM00353	1.7E-16	148	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.5E-10	148	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-15	149	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MDAIEVSFDY YAAMESLPDF DFKDSGGGFI PSYVSESAAM DDKLHRRWNY EEEYMSFPTC 60 FDQAGSNLSD FVDEIRRESM QLPDLDTVQS MQGSVSSSGH IKSTIPQSKC GFSNHSQRDY 120 VFTHNSNHHI DQGFHSRKSA TSAAHKNVIS ERKRRGKLNE RLYTLRSLVP FITKMDKASV 180 VKDAIAYIHH LENQVKEIRA EIAALRSNHE SDLSPSLVSH NNSSVAQIHE DHPEIAKPSP 240 FMAAARSKDS GQTVVQVDAC KIEGRLFRIT MCCLKQRYLL AQLTKALESV HILEVKTSNI 300 ISFGGHIVNT VIAETKEMKD MVEAEGLKQA ILDAASNYGL LH

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MDAIEVSFDY YAAMESLPDF DFKDSGGGFI PSYVSESAAM DDKLHRRWNY EEEYMSFPTC  60
FDQAGSNLSD FVDEIRRESM QLPDLDTVQS MQGSVSSSGH IKSTIPQSKC GFSNHSQRDY  120
VFTHNSNHHI DQGFHSRKSA TSAAHKNVIS ERKRRGKLNE RLYTLRSLVP FITKMDKASV  180
VKDAIAYIHH LENQVKEIRA EIAALRSNHE SDLSPSLVSH NNSSVAQIHE DHPEIAKPSP  240
FMAAARSKDS GQTVVQVDAC KIEGRLFRIT MCCLKQRYLL AQLTKALESV HILEVKTSNI  300
ISFGGHIVNT VIAETKEMKD MVEAEGLKQA ILDAASNYGL LH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.1	3e-28	bHLH family protein