PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00047903-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ARF
Protein Properties Length: 805aa    MW: 89186.3 Da    PI: 8.7214
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00047903-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82.1e-23159260199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f k+lt+sd+++ g +++p+ +ae++       + ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD +vF   +
  PSME_00047903-RA 159 FAKTLTQSDANNGGGFSVPRFCAETIfprldysSDPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDAIVFL--R 247
                       89*********************999****995444444..8999*********************************************..4 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       + ++el+v+v+r+
  PSME_00047903-RA 248 SATGELWVGVRRS 260
                       479999*****97 PP
2Auxin_resp105.56.1e-35338419383
        Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                       + a ++++FevvY+Prast+eF+vk+++v +al++++s+GmRfkm fetedss++++ +Gtv+ v+ +dpv WpnS+Wr+L+
  PSME_00047903-RA 338 TLAVSGQPFEVVYYPRASTPEFCVKAKSVDSALRIQWSPGMRFKMPFETEDSSRISWfMGTVSFVQFADPVLWPNSPWRLLQ 419
                       677899**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.49E-29153285IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-35154270IPR015300DNA-binding pseudobarrel domain
CDDcd100177.31E-20158259No hitNo description
PROSITE profilePS5086312.52159261IPR003340B3 DNA binding domain
SMARTSM010191.6E-19159261IPR003340B3 DNA binding domain
PfamPF023628.7E-22159260IPR003340B3 DNA binding domain
PfamPF065072.8E-30337419IPR010525Auxin response factor
PROSITE profilePS5174516.57719799IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 805 aa     Download sequence    Send to blast
MERGLRFAAC CRSVYSPCAR TMLRKMESGE VKIEKGLDPQ LWHACAGGMV QMPAINSKVY  60
YYPQGHAEHA ATVPDFAGNM RMSPSILCRV VSVKFLADTE TDEVYARMRL IPISDDEQNS  120
SVEDSEAESR PPSPPRTPVA PNSQTQTENG NKNHPPASFA KTLTQSDANN GGGFSVPRFC  180
AETIFPRLDY SSDPPVQTVL AKDVHGEVWK FRHIYRGTPR RHLLTTGWST FVNQKKLVAG  240
DAIVFLRSAT GELWVGVRRS TRSTTESHSH SHLQSSSAWH LPVSSITASP PPPYRASRWE  300
VKAADYFSGI ATANTNGSTG FSRNRGRVSA KSVIEACTLA VSGQPFEVVY YPRASTPEFC  360
VKAKSVDSAL RIQWSPGMRF KMPFETEDSS RISWFMGTVS FVQFADPVLW PNSPWRLLQV  420
TWDEPDMLQN VKRVSPWLVE LVSNMPPIQM TPFTLPKKKL RVTQSPDFQL EGQGIMGLQM  480
STVSNSLLRQ INPWHGISDN VPVGIQGARQ DRIYGISLSD IFPNKGQNGL FFKHPSHQEQ  540
GVMPTRVCTE LNIGNSPQHD GSGMQSSPSS FLTVGNSSQN EQKTSSGSAS SSTTKGSSFL  600
LFGKPIHTAP SPKSCQQQQS GLSSSDGTAF HMFSENGSSR LTSNNSSNGN QEALERVQKL  660
VTGRRDGTKL SENYGLRLSH GESLDYAANG MRSLQWFKDQ TSVLKLEKDK QENTFEDSIV  720
HCKVFKETEE VGRTLDLSLF CTYEQLYDKL AKMFGIDESE LSNRVLYKGL GGSVRHAGDE  780
PYKDFMKTVR RLTILSDSGS DNMAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A5e-693344015353Auxin response factor 1
4ldy_B5e-693344015353Auxin response factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1194960.0BT119496.1 Picea glauca clone GQ04106_G13 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011624034.10.0auxin response factor 18
TrEMBLA0A0D6QZZ40.0A0A0D6QZZ4_ARACU; Auxin response factor
STRINGERN077010.0(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16