PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048045-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GATA
Protein Properties Length: 205aa    MW: 22846.3 Da    PI: 10.3593
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048045-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA38.81.3e-1290124135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C+ C+t  Tpl R+gpdg+k+L naCG+ ++k g+
  PSME_00048045-RA  90 CAECKTNRTPLCRNGPDGPKSLYNACGIQFKKIGK 124
                       ********************************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.7E-884136IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.94E-784132No hitNo description
Gene3DG3DSA:3.30.50.106.4E-1188125IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.3E-1090124IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MEAKFTVLYP SACRCICLMM PRNKPQKSVN IFPLQQEGHE ERKLQENGKK SSAKESLQSL  60
RRFLHIGENR LVKTGEMDAE FLDAAVARTC AECKTNRTPL CRNGPDGPKS LYNACGIQFK  120
KIGKREQQKA GSRLPSVSSV RQMTAKRKQQ DSDEYDPLPR DAAIAATSHP LRKKSTATVT  180
APPTGGHHSS VVLERIQFKR APVVE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9QY085e-21A0A0C9QY08_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_23_1742 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.11e-13GATA transcription factor 20