PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048089-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GRF
Protein Properties Length: 730aa    MW: 78701.6 Da    PI: 7.5861
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048089-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC80.31.8e-25271315145
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                       d+epgrCrRtDGKkWRCsr+v++++k+CErH+hrgr+rsrk++e 
  PSME_00048089-RA 271 DPEPGRCRRTDGKKWRCSRDVVPDQKYCERHMHRGRHRSRKPVEG 315
                       79****************************************985 PP
2QLQ59.59.8e-21204239237
               QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                       +FT +Q+q+L++Q+l++Ky++a+++vPp+L+ +i+k
  PSME_00048089-RA 204 PFTQSQWQELEHQALIFKYMMAGVQVPPDLIIPIRK 239
                       9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.7E-12203239IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.4E-15204238IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.633204239IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.898271315IPR014977WRC domain
PfamPF088791.2E-21272314IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MDFSHSSVSV SGSLSELGDH RHSRMPGLSS PTGIGIGMLS HVSVGDPYNK QCRPASEMDL  60
DERSRGPIKI ARTDSFPCRQ QQQQQHHNSN NGNSNSAAAI GSLLRSNSIM SDGRLTTCSP  120
TNSSASDGGG LITNEGCVNV SEQRLMRSDS VVSAYGGGGG ARTLSFHPTY NCNKPAGLPL  180
GMSRENSASH MGAMHGIITG TRPPFTQSQW QELEHQALIF KYMMAGVQVP PDLIIPIRKS  240
VAALSVALSA GSYHPSMAWN SFQLGFASNT DPEPGRCRRT DGKKWRCSRD VVPDQKYCER  300
HMHRGRHRSR KPVEGQTAAP NSQSQLGGPT PTITTTTTNT NTPNGPSPSA ISLAAARNTN  360
IHTSNLRPPV TVNSHHHHHQ QQQSPLGMNS NLLLQIAPGS ASSMGSDKEY RYMNGMKGGD  420
IDEQVFFSDV SGSTRGLGQD SMLSSVNNNG WRSSMTSKVT QVKTEQNGSF MQYNSPQLRT  480
LLGQDFSLMS DASQQIPQQH SFRNSGFGVV ESGNVGRESE GQGQPLRHFF DDWPRSRDAS  540
TLSWSDVEED RSNRSSSTTQ LSISIPMASS DFSATNSSSP RGKLSLSPLK LSMSRDHDDD  600
DDTHMGLGVG NIINEEERHR HSNWVPISWE SPVGGPLAEV LQSTSECKNA SSGLQHNFMN  660
GTADHGWECS PRDSQNNTNS LSHNNDIAVS SSPTGVLQKT FVSLSDSTST GSSPRSAAPP  720
KTTQSAILLA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7110530.0KJ711053.1 Pinus tabuliformis clone PtGRF3 GRF3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400506.11e-156growth-regulating factor 6-like isoform X1
RefseqXP_024400507.11e-156growth-regulating factor 6-like isoform X1
TrEMBLA0A0K0M7160.0A0A0K0M716_PINTB; GRF3
STRINGPP1S344_39V6.11e-135(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.15e-43growth-regulating factor 5