PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048167-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 239aa    MW: 26232.3 Da    PI: 6.66
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048167-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.41.8e-367104196
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                       +C aCk+lrrkC+k+Cv+apyf++e+  + +f ++hk+FGasn +kll +lp e+r++a+ s++y Aear++dPvyG+v++i +lqqq+++lk
  PSME_00048167-RA   7 PCGACKFLRRKCVKGCVFAPYFCSEEmgAPRFGAIHKVFGASNFSKLLMHLPVEHRDNAVVSVLYAAEARLQDPVYGCVSHIYALQQQVANLK 99 
                       7***********************995569**************************************************************9 PP

            DUF260  92 aelal 96 
                        +la+
  PSME_00048167-RA 100 GKLAA 104
                       99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.8756109IPR004883Lateral organ boundaries, LOB
PfamPF031956.4E-357103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGGGGAPCGA CKFLRRKCVK GCVFAPYFCS EEMGAPRFGA IHKVFGASNF SKLLMHLPVE  60
HRDNAVVSVL YAAEARLQDP VYGCVSHIYA LQQQVANLKG KLAAGYAQLA DCSHSDVSSL  120
SPAHDQYGQQ SEMPSLTSNS NSSSPSPSDK VQYLNTWGVP QQIPSDSVEI NNYCEEARDD  180
KSLWSSYSMC MQGSTHPVST AQETHVFHNG ERFSEQRHLD NNENGDLQDL VLAILRRNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3631097111LOB family transfactor Ramosa2.1
5ly0_B1e-3631097111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9GS343e-50B9GS34_POPTR; Uncharacterized protein
STRINGPOPTR_0002s04200.15e-51(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.19e-49LBD family protein