PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048285-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 66aa    MW: 7795.97 Da    PI: 11.8921
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048285-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.84.1e-113365238
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgt 38
                      +y+GVr+++ rgr+vAeI+ p+    + k+ +lg+++t
  PSME_00048285-RA 33 RYRGVRRRP-RGRFVAEIHNPK----SkKQRWLGTYDT 65
                      69*******.8*********84....35*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.88E-93365IPR016177DNA-binding domain
PROSITE profilePS5103213.883366IPR001471AP2/ERF domain
SMARTSM003800.00343366IPR001471AP2/ERF domain
PfamPF008472.2E-63365IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-133365IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
MKSQQQSKLQ KNESLSPNKL SEKQLKRGKE AGRYRGVRRR PRGRFVAEIH NPKSKKQRWL  60
GTYDTV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016552721.12e-13PREDICTED: ethylene-responsive transcription factor ESR1-like
RefseqXP_016557500.12e-13PREDICTED: ethylene-responsive transcription factor ESR1-like