PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048286-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 413aa    MW: 46258.1 Da    PI: 6.7452
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048286-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.32.9e-163482254
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                      +y+GVr+++ +gr++AeI+dp++   +k+ +lg+++taeeAa a++ a++++ 
  PSME_00048286-RA 34 RYRGVRRRP-WGRFAAEIHDPKT---KKQRWLGTYDTAEEAACAYDFAARAMS 82
                      69*******.**********954...5*******************9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.6E-313497IPR001471AP2/ERF domain
PROSITE profilePS5103220.893491IPR001471AP2/ERF domain
PfamPF008475.0E-103483IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-193491IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-263490IPR001471AP2/ERF domain
CDDcd000181.39E-273490No hitNo description
PRINTSPR003671.7E-83546IPR001471AP2/ERF domain
PRINTSPR003671.7E-85773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MKSQQQQSEL QKNESLSPNK LSEKQFKRGK EAGRYRGVRR RPWGRFAAEI HDPKTKKQRW  60
LGTYDTAEEA ACAYDFAARA MSGIKARTNF IYLNSEHCML STPTPPASFT GSTFPTNIKD  120
PFSHKPQKLQ DSWLHCLWLD SSTTRPSPCD EAKQQQQKQQ FSVNGGYNML GNTVSSWRPS  180
NNEIENNNNQ LLAGAGSSSV VPVSLPRDHH SINASTWQHL PLADPLLLSL SKNTIDHTYR  240
STIPSNNSNG HSDSGLLDQI ISGYLPMAVS ATSPASSVCI PKYFSNNNTL NCAVYVPQEN  300
YSTITPTCTG FNTSDHIMAD LERFIETNYI GLYFNPEAQQ QPQDHQQPPP PPQDQPQQQQ  360
LEANNFNSTH FSAPHPYTGY LFSMPPISDA LEETLHLTAE LFDSQQYGNG YYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-182990971Ethylene-responsive transcription factor ERF096
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-09DORNROSCHEN-like