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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | PSME_00048289-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 120aa MW: 13557.4 Da PI: 10.434 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 24.9 | 4.7e-08 | 7 | 33 | 19 | 48 |
TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqkyl 48
lG++ W++Ia ++ +Rt+ ++k++w++++
PSME_00048289-RA 7 LGNK-WSLIAGLLP-RRTD-EIKNHWNTHM 33
8999.*********.****.*******986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 13.325 | 1 | 37 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 4.4E-10 | 7 | 47 | IPR009057 | Homeodomain-like |
| Pfam | PF00249 | 1.6E-5 | 7 | 32 | IPR001005 | SANT/Myb domain |
| SuperFamily | SSF46689 | 2.2E-6 | 7 | 46 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 4.21E-4 | 9 | 33 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 120 aa Download sequence Send to blast |
MSRSSSLGNK WSLIAGLLPR RTDEIKNHWN THMKKKLVRR GFEPQSHIPL SQANNSNTTC 60 TSVSVAKHGI PEPADVFEYD RSESSPKQLV VCKAEEHPEL SKKFLKSYHR NFKNIAAASV |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | NP_001131856.1 | 3e-18 | uncharacterized protein LOC100193234 | ||||
| Refseq | XP_012462415.1 | 5e-18 | PREDICTED: transcription repressor MYB6-like | ||||
| TrEMBL | B1PPT9 | 4e-34 | B1PPT9_PINPS; R2R3-Myb14 transcription factor (Fragment) | ||||
| STRING | Gorai.013G139200.1 | 2e-17 | (Gossypium raimondii) | ||||
| STRING | GRMZM2G160838_P01 | 2e-17 | (Zea mays) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G13540.1 | 4e-18 | myb domain protein 5 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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