PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048314-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 252aa    MW: 27955.8 Da    PI: 6.8708
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048314-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601253.8e-3991189199
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk +++kC+++Cvlapyfp+++p+kf  vhk+FG+ +v kll++lp e+r +a+sslvyeA+ r+rdPvyG+vg+i++lq++++ l+ +
  PSME_00048314-RA  91 PCAACKNQKKKCSEKCVLAPYFPQNDPQKFLSVHKVFGNVHVAKLLQELPAEKRGEAVSSLVYEARERLRDPVYGCVGIISDLQNKVALLQFQ 183
                       7******************************************************************************************** PP

            DUF260  94 lallke 99 
                       la+++e
  PSME_00048314-RA 184 LASTEE 189
                       999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.92590191IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-3891188IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MTQAGDTDVT QVDRCTVNNK YKLCDCVSTF TKVWQQSSSS LVGLIIWLPS KQYGGAGPRF  60
KSSLAGSCKE VVFADMSNMS AHSKSTETAY PCAACKNQKK KCSEKCVLAP YFPQNDPQKF  120
LSVHKVFGNV HVAKLLQELP AEKRGEAVSS LVYEARERLR DPVYGCVGII SDLQNKVALL  180
QFQLASTEED LARIRLLHAN LLTLDTGYLQ VSDPDFYSGS LQAENKDTST NPPVLDDGDP  240
MQLWEPLWTY TK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-359119311113LOB family transfactor Ramosa2.1
5ly0_B4e-359119311113LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LQI99e-72B8LQI9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-43LOB domain-containing protein 1