PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048460-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 364aa    MW: 41644.4 Da    PI: 7.34
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048460-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.53.9e-12188213126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       y   +C+++ +tG+C yGd CkF+H+
  PSME_00048460-RA 188 YQPDICKDYKETGYCGYGDACKFMHD 213
                       66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.97E-9186218IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577187215IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7187214IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-10188213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-12188218IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.108.3E-14245303IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.14E-12260303No hitNo description
PfamPF139203.1E-8260303No hitNo description
PROSITE profilePS5008910.468261299IPR001841Zinc finger, RING-type
CDDcd001624.05E-7261302No hitNo description
SMARTSM001841.2E-4261298IPR001841Zinc finger, RING-type
PROSITE patternPS005180276285IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAETNETGPS QQQTCNFFKK PTRNKNIRKR EVEEETEEAN DEGSAVVHKL KAAKKPDNKM  60
HFSSGPPKKS NIEDNDSETA GLATSTFFYE SSKQIQVQND SRATATLETE TEFTRDARAI  120
RERVLKQGEE SLKGKNPGDE KLYKGIHGYT DHKAGFRREH TISGEKAGGA HGPLRASAHI  180
RSSIRFDYQP DICKDYKETG YCGYGDACKF MHDRGDYKSG WQMEREWQES EKKRKNNLAR  240
GLAEEEEEEA DSDEDALPFA CYICRQAFED PVVTRCKHYF CEHCALKHHA KNKNCYVCNK  300
PTNGVFNTAH EILRKMGEDK INVIRTQLVL KKPFGWTVLQ ASPSQILHSN RFWLVPYEID  360
QFQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M8e-7413161317RING finger protein 113A
5z58_M8e-7413161317RING finger protein 113A
6ff4_t8e-7413161317RING finger protein 113A
6ff7_t8e-7413161317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1160260.0BT116026.1 Picea glauca clone GQ03710_K19 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028112176.11e-161zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-150C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLW9RK451e-157W9RK45_9ROSA; Zinc finger CCCH domain-containing protein 1
STRINGXP_010103154.11e-157(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-138C3H family protein