PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048506-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 335aa    MW: 38282.9 Da    PI: 7.5183
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048506-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.32.7e-32261319159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vk++++prsYYrCt+++C+vkk+ver a+dp++v++tYeg+H+h+
  PSME_00048506-RA 261 LDDGYKWRKYGQKVVKNTHHPRSYYRCTQNNCRVKKRVERLADDPRMVITTYEGRHTHS 319
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-34246319IPR003657WRKY domain
SuperFamilySSF1182906.41E-29253319IPR003657WRKY domain
PROSITE profilePS5081129.344256318IPR003657WRKY domain
SMARTSM007749.8E-38261320IPR003657WRKY domain
PfamPF031061.6E-25262318IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
KYLNIPLLCF ALYTSLGPGF DSQQEAKCKR HSKRHDLVAL ILIPELVVAA LTATMPESYG  60
QINPFVSAEC MQGYFLTRPQ HELVHSMDSF QETFHERNGV PDGELQPSNF ASQSDNSDYC  120
FLRPSQLKLS GNREFPAFSN RVSQDQTLLM NSTEYNDSQR GLISSPLGHA ADQVSFSCTD  180
TISHIDYRTN LPEISLLRST DDQSFDSGVQ ENEKRSEGLK NLSNLWGASS SCDVKMKKVK  240
VRRKLREPRF CFQTMSDVDV LDDGYKWRKY GQKVVKNTHH PRSYYRCTQN NCRVKKRVER  300
LADDPRMVIT TYEGRHTHSP CSDTQSEQHD FLSSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-26252318874Probable WRKY transcription factor 4
2lex_A1e-26252318874Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239245KVRRKLR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00618PBMTransfer from AT2G44745Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1195600.0BT119560.1 Picea glauca clone GQ04107_D16 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5AE580.0D5AE58_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.12e-48WRKY family protein