PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048511-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 216aa    MW: 25031.9 Da    PI: 9.609
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048511-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.8e-087293426
                      ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                      e C ++ + G+Ck G +C FaHg
  PSME_00048511-RA 72 ETCVNYKK-GYCKNGLTCEFAHG 93
                      6799****.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.6E-56693IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.8226895IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-57393IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.352103127IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MAKELQPGLM TMMPETFLNT CGTQNQSSDE VRMFKFKVVI CMRDPGHDWT RCPFAHRGER  60
ARRGHPSLYC GETCVNYKKG YCKNGLTCEF AHGWFESWLH PHRYRTKHCK HGVNCNKRIC  120
FFAHGDEEIR FPPTLSSSKM KDHKNYSSTH NRSLSTNVVT PQIYNATRLD VVSSPRGVQA  180
AQMLLKPLYM NSPLQYNTLE IFLRFVKTWP PQVVPI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1101261e-166BT110126.1 Picea glauca clone GQ03216_L21 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.12e-42C3H family protein