PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00048520-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 504aa MW: 55780.9 Da PI: 6.4998

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00048520-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	90.8	1.6e-28	2	100	1	94
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C+++Cvl+p++ p++q++++a+++k++G++ +++l+++ pe+ r+++++sl+y A+ r+ dP+yG++g++ ++++ ++ PSME_00048520-RA 2 SCNGCRVLRKGCNDSCVLRPCLhwlrtPESQANATAFLAKFYGRTGLMNLISNGPEHLRPAIFRSLLYDACGRMLDPIYGSTGLVCSGNWAVC 94 6******************************************************************************************** PP DUF260 89 qlkael 94 q+ +e PSME_00048520-RA 95 QAGVES 100 *98775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.812	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.7E-23	2	99	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MSCNGCRVLR KGCNDSCVLR PCLHWLRTPE SQANATAFLA KFYGRTGLMN LISNGPEHLR 60 PAIFRSLLYD ACGRMLDPIY GSTGLVCSGN WAVCQAGVES ILRGNSDSHF VPLEAMAGEL 120 HRDKAKGRFK VVSRAKRKRK ERDRLPINNL NDSLCKSDGR CEVKNSLHRA ADNGKSSTEQ 180 EQEQDEFGIA DQVMIDHCHN LICNLKTSVP EDEAPCNAVE LELTLGSQVN RSQGSASSPT 240 LRKSCFYGLL CSLLVRFYGL FWSVLGLVPV LLRSAVAFLR CAGSGSFPDI CTLFIPVGLR 300 RFRSDLSPLV PVTFVLSSVS ASGCDFFPLF SAEDRGSTEP ETDAYRDNQR VHHHSTFRDH 360 GDDARGGGNI ADDVRGEDED HVMGGDDDDA RDQDDARDQG QDHPSGRQKA TFEQVDGREP 420 MTFYPSNIAD ALPWEITTVD VTLATCTSHH KKLRDDLAKM DLPAESQQSL QILLESLGKF 480 IDVYKSVGPT TDCFIHLMRM RKAK

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MSCNGCRVLR KGCNDSCVLR PCLHWLRTPE SQANATAFLA KFYGRTGLMN LISNGPEHLR  60
PAIFRSLLYD ACGRMLDPIY GSTGLVCSGN WAVCQAGVES ILRGNSDSHF VPLEAMAGEL  120
HRDKAKGRFK VVSRAKRKRK ERDRLPINNL NDSLCKSDGR CEVKNSLHRA ADNGKSSTEQ  180
EQEQDEFGIA DQVMIDHCHN LICNLKTSVP EDEAPCNAVE LELTLGSQVN RSQGSASSPT  240
LRKSCFYGLL CSLLVRFYGL FWSVLGLVPV LLRSAVAFLR CAGSGSFPDI CTLFIPVGLR  300
RFRSDLSPLV PVTFVLSSVS ASGCDFFPLF SAEDRGSTEP ETDAYRDNQR VHHHSTFRDH  360
GDDARGGGNI ADDVRGEDED HVMGGDDDDA RDQDDARDQG QDHPSGRQKA TFEQVDGREP  420
MTFYPSNIAD ALPWEITTVD VTLATCTSHH KKLRDDLAKM DLPAESQQSL QILLESLGKF  480
IDVYKSVGPT TDCFIHLMRM RKAK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67100.1	9e-54	LOB domain-containing protein 40