PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00048569-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 460aa MW: 51960.1 Da PI: 5.0842

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00048569-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	418.1	1.5e-128	237	453	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp+aflgpkcalwdc+rpaqg++w+qdycs fh +la neg+pg++pvlrp+gidlkdg+lfaalsak+q k vgipecegaatakspwna PSME_00048569-RA 237 PPPAAFLGPKCALWDCSRPAQGTKWCQDYCSDFHMSLASNEGAPGMRPVLRPGGIDLKDGPLFAALSAKTQEKAVGIPECEGAATAKSPWNAH 329 89***************************************************************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 elfd+ +lege++rewlffdkprrafesgnrkqrslpdysgrgwhesrkqv+k+fgglkrsyymdpqp ++fewhlyeyein++da+alyrle PSME_00048569-RA 330 ELFDMYVLEGESMREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVIKDFGGLKRSYYMDPQPYTQFEWHLYEYEINDCDACALYRLE 422 ***************************************************************************************** PP VOZ 187 lklvdekksakgkvskdsladlqkklgrlta 217 lk+ +kk++kgkv d+l+dlq++lg+l+a PSME_00048569-RA 423 LKMICSKKNTKGKVGGDPLVDLQHQLGKLSA 453 ***************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MEGGKGKRGS AWSFRQQFKN KAKNRVDDLQ GMFNDLQQAR KENRMTDVTI LEEQVHQMLR 60 EWKAELHEAS PTSSLLAESL SSSELSSDMK RLLQLHEEED DASSSPKLQL DELVLQANNN 120 ANYQGDFLVD DLHTPEKDFE RVSRCTNIGE GLHQNSYSQT SEQLPANIEH QENNNYVQTS 180 EQLPPNLVQG LEVTSRLEGG QINFHQDYIP AAQPIFTLTG EEETSPVFNG PQPGLCPPPA 240 AFLGPKCALW DCSRPAQGTK WCQDYCSDFH MSLASNEGAP GMRPVLRPGG IDLKDGPLFA 300 ALSAKTQEKA VGIPECEGAA TAKSPWNAHE LFDMYVLEGE SMREWLFFDK PRRAFESGNR 360 KQRSLPDYSG RGWHESRKQV IKDFGGLKRS YYMDPQPYTQ FEWHLYEYEI NDCDACALYR 420 LELKMICSKK NTKGKVGGDP LVDLQHQLGK LSAEFSWVAK

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MEGGKGKRGS AWSFRQQFKN KAKNRVDDLQ GMFNDLQQAR KENRMTDVTI LEEQVHQMLR  60
EWKAELHEAS PTSSLLAESL SSSELSSDMK RLLQLHEEED DASSSPKLQL DELVLQANNN  120
ANYQGDFLVD DLHTPEKDFE RVSRCTNIGE GLHQNSYSQT SEQLPANIEH QENNNYVQTS  180
EQLPPNLVQG LEVTSRLEGG QINFHQDYIP AAQPIFTLTG EEETSPVFNG PQPGLCPPPA  240
AFLGPKCALW DCSRPAQGTK WCQDYCSDFH MSLASNEGAP GMRPVLRPGG IDLKDGPLFA  300
ALSAKTQEKA VGIPECEGAA TAKSPWNAHE LFDMYVLEGE SMREWLFFDK PRRAFESGNR  360
KQRSLPDYSG RGWHESRKQV IKDFGGLKRS YYMDPQPYTQ FEWHLYEYEI NDCDACALYR  420
LELKMICSKK NTKGKVGGDP LVDLQHQLGK LSAEFSWVAK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011626288.1	1e-180	transcription factor VOZ1
Refseq	XP_011626289.1	1e-180	transcription factor VOZ1
Swissprot	Q9SGQ0	1e-163	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	W1Q0P1	1e-178	W1Q0P1_AMBTC; Uncharacterized protein
STRING	ERN14021	1e-179	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-160	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]