PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048623-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 299aa    MW: 31516.7 Da    PI: 6.236
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048623-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.22.2e-06271296530
                       HHHHHHHHHHHHHHHHHHHHCTSCCC CS
               HLH   5 hnerErrRRdriNsafeeLrellPka 30 
                       h+++Er RR+ri +++  L+el+P++
  PSME_00048623-RA 271 HSIAERLRRERIAERMKSLQELVPNS 296
                       99**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.6E-6264297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.503266299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.12E-4270298No hitNo description
Gene3DG3DSA:4.10.280.105.6E-6271296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDDFFDQILS STSSWMDMSG VQANGMSGDS IGPFQESLKH PTTPSDMLHR LVESNTVAGG  60
PTSLQLNTSV PATLQGSTSQ FLTAIGGPLR TAVSLAELAS AGSSSSEASG FQQVLADSHP  120
PAPVWSESYT VSSALPAAVG QAKLEGFTLK EETVQGDGHL LGKRSHSEDK MLARENRSGD  180
TEHDDLQGTL LTSYTGPQGG QTVLPRTPGA QSHQQNLSTQ TIQSGEGTSL QQYGNHSAVS  240
QLQSGAVGGN AANGAARPRV RARRGQATDP HSIAERLRRE RIAERMKSLQ ELVPNSNKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275280RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1006860.0BT100686.1 Picea glauca clone GQ00411_C12 mRNA sequence.