PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048626-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 202aa    MW: 22768.1 Da    PI: 7.7671
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048626-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.11.1e-41441431100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       aCaaCk++r+kC+++Cvlapyfp+++p+kf  +h+lFG+ +v+kll++lp ++r da+sslvyeA+ar+ dPv+G++gvi++lq++le+++++
  PSME_00048626-RA  44 ACAACKFHRKKCSEKCVLAPYFPHNDPNKFLLLHRLFGTGHVVKLLQELPAKQRGDAVSSLVYEAKARVADPVHGCAGVINNLQKKLEEVQSQ 136
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la+++++
  PSME_00048626-RA 137 LASAQAK 143
                       **99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.23743144IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3944141IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MNSLYHNKTK LCLLHPCNAE ENTQQLLCAI VLKIMSKVSR EETACAACKF HRKKCSEKCV  60
LAPYFPHNDP NKFLLLHRLF GTGHVVKLLQ ELPAKQRGDA VSSLVYEAKA RVADPVHGCA  120
GVINNLQKKL EEVQSQLASA QAKLYNMSAP QSNFIINLIN SWDHQGWDPN FESTLLQENQ  180
VRQSTNPTVL DVEVDSLPPW DY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-344514812115LOB family transfactor Ramosa2.1
5ly0_B3e-344514812115LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240601.11e-45LOB domain-containing protein 1-like
RefseqXP_015078864.11e-45LOB domain-containing protein 1-like
RefseqXP_017246117.12e-45PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR01e-45LBD1_ARATH; LOB domain-containing protein 1
TrEMBLB8LQI96e-52B8LQI9_PICSI; Uncharacterized protein
STRINGSolyc06g005090.2.15e-45(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.15e-48LOB domain-containing protein 1