PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048716-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 237aa    MW: 27137.7 Da    PI: 7.9711
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048716-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.3e-084331948
                      TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +G g+W++++++ g++R++k+c+ rw +yl
  PSME_00048716-RA  4 HGEGRWSSVPEKTGLKRCGKSCRFRWVNYL 33
                      99**************************97 PP
2Myb_DNA-binding50.83.8e-163982146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                      rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++
  PSME_00048716-RA 39 RGNISQDEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEVKNYWNT 82
                      7899******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.907133IPR017930Myb domain
SMARTSM0071768335IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-14340IPR009057Homeodomain-like
SuperFamilySSF466892.45E-20480IPR009057Homeodomain-like
CDDcd001670.00152433No hitNo description
PfamPF002491.2E-6433IPR001005SANT/Myb domain
PROSITE profilePS5129424.3913488IPR017930Myb domain
SMARTSM007172.5E-153886IPR001005SANT/Myb domain
PfamPF002491.9E-143982IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-234187IPR009057Homeodomain-like
CDDcd001674.14E-114384No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGAHGEGRWS SVPEKTGLKR CGKSCRFRWV NYLRPSVKRG NISQDEEDLI IRLHKLLGNR  60
WSLIAGRIPG RTDNEVKNYW NTRLNKKDHA RGCIRLKSIK PRKPNISEPA ASLLTPTSAN  120
QEGAKEKVIC YPVMEDLKNE PTSSNYPMKQ EASSSSDPGK LAAVSAEMDL WNSLQLNLNS  180
IPSWTCSNFL YDDFKSDFFQ EPFGYNQENV RPLCCMFDTE NVCEDYVEIF NPFQEPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-1948745127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Regulates the epidermal cell fate specification. Mediates the formation of columellae and accumulation of mucilages on seed coats. Controls the elongation of epidermal cells positively in roots but negatively in stems, leading to the promotion of primary roots elongation and repression of leaves and stems elongation, respectively. Ovoids ectopic root-hair formation, probably by inducing GL2 in roots. Controls trichome initiation and branching. {ECO:0000269|PubMed:11437443, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15668208, ECO:0000269|PubMed:15728674}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ962766e-45MYB23_ARATH; Transcription factor MYB23
TrEMBLA0A2P2J7R32e-48A0A2P2J7R3_RHIMU; Transcription factor TT2-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40330.13e-47myb domain protein 23
Publications ? help Back to Top
  1. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  2. Yu D, et al.
    RPN1a, a subunit of the 26S proteasome, controls trichome development in Arabidopsis.
    Plant Physiol. Biochem., 2015. 88: p. 82-8
    [PMID:25676129]
  3. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  4. Kohanová J, et al.
    Root hair abundance impacts cadmium accumulation in Arabidopsis thaliana shoots.
    Ann. Bot., 2018. 122(5): p. 903-914
    [PMID:29394308]