PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048777-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 596aa    MW: 67278 Da    PI: 7.2271
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048777-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY795.3e-25313372259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       dDg++WrKYGqK++ gs++prsYYrCt++   gC++kk+v+r++ d   +eitY g H ++
  PSME_00048777-RA 313 DDGHTWRKYGQKDILGSQHPRSYYRCTHKydmGCQAKKRVQRND-DSPRFEITYIGFHVCQ 372
                       8***************************99999**********9.8999*********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-24306372IPR003657WRKY domain
SuperFamilySSF1182902.22E-22311373IPR003657WRKY domain
SMARTSM007741.7E-35312373IPR003657WRKY domain
PROSITE profilePS5081119.129313364IPR003657WRKY domain
PfamPF031069.8E-24313372IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MHRRSFTAFV GLDFEIYSTD PRYSNSKVGD LNFEPFSRRC RRWTFDRSED QRPLSHHIQR  60
MQLVSRVLLP FITHLISIIR PSASSYSSHT LSYSACSFIS IESRHLISFW VVCFTGFFGY  120
PTGDKGPQAQ LDIHMEGRGK MVDREKIPTS ELENCILHEV IHGCKVARDL QTRVNSTSQS  180
PDSKEFIANS SAEIVTTFRK VMQLLGSSSS SPMLVEKPQQ SIGEEGILHL HEPMSISGSL  240
KQSYSSKDSA AVHGHPVAVL PKLNSSEAAE SSERESSNVK ERIETSKQKK SLPRWTTKVN  300
AISTETGIDV PPDDGHTWRK YGQKDILGSQ HPRSYYRCTH KYDMGCQAKK RVQRNDDSPR  360
FEITYIGFHV CQIKPRLLEL HNSFRSPEVG PMAQRIPGNA FVFGSTSNPQ PETSILHDLS  420
FAQIISRASR PLEDNTIIPA MLAYHPPELF PINPHQGNPA MVSHRPPSLL QPKDEIVFTH  480
FLPSEPGEFG ELGIGNLSQG FCSSVAFGQN DLMQFMDSGE RGTTSHEQLQ RQASESEFTE  540
VVSVHTCRAD SPLIDMDIMF HTVTLHALHP ELICRSFNWE INIFHGTLRS RDAFFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-21313372969OsWRKY45
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-28WRKY family protein