PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048849-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 237aa    MW: 26428.9 Da    PI: 5.8198
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048849-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26068.81.2e-215801589
            DUF260 15 dCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89
                      dCv+apyf++++ + +fa+vhk+FGasnv+k+l +lp  +r +a+ ++ yeA+ar++dPv +  + +  +q ql++
  PSME_00048849-RA  5 DCVFAPYFCSDEgATHFAIVHKIFGASNVSKILLHLPMPDRCEAVVTISYEAHARLQDPVASLQAELAFVQAQLAS 80
                      8*********9989***********************************************999999999988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089112.62192IPR004883Lateral organ boundaries, LOB
PfamPF031953.8E-18579IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MNMLDCVFAP YFCSDEGATH FAIVHKIFGA SNVSKILLHL PMPDRCEAVV TISYEAHARL  60
QDPVASLQAE LAFVQAQLAS RVSSGSASIS ANHPVISSSS YSQHLQFPAH LSLPCQPIPQ  120
PYNALLSRVK EENSCGFATY MDCDFSVSPS DSSPPLMEVL QRCRSLEENE GEDNGELQAL  180
AHALLRRDVP NLAYLNNFNR PPLPDKYFRR YIWNFFLSQM ATKRAKMTTN LEEDNLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-145782597LOB family transfactor Ramosa2.1
5ly0_B8e-145782597LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390481.11e-33uncharacterized protein LOC112289471
TrEMBLD5A9D38e-79D5A9D3_PICSI; Uncharacterized protein
STRINGPP1S261_2V6.19e-34(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.13e-29lateral organ boundaries-domain 29