PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048850-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 235aa    MW: 25768.9 Da    PI: 8.7193
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048850-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.6e-182383257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++R+ ++++q+++Le+ F++   +p +ee++++  +l    ++++ +V++WFqNr+a+ k+
  PSME_00048850-RA 23 KTRWHPKPDQIQILEAIFNSgMVNPPREEIKRIRGQLeefgHVEDVNVFYWFQNRKARVKR 83
                      89*****************99*************************************997 PP
2Wus_type_Homeobox107.11.1e-342284264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       a+tRW P+p+Qi+iLe++++sG+++P++eei+ri+ +Lee+G++ed NVfyWFQNrkaR ++k
   PSME_00048850-RA 22 AKTRWHPKPDQIQILEAIFNSGMVNPPREEIKRIRGQLEEFGHVEDVNVFYWFQNRKARVKRK 84
                       689**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.2361984IPR001356Homeobox domain
SMARTSM003891.9E-62188IPR001356Homeobox domain
SuperFamilySSF466893.12E-122287IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-82389IPR009057Homeodomain-like
CDDcd000861.96E-72385No hitNo description
PfamPF000469.1E-162383IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MKGALSHNYV PGKERERTVP VAKTRWHPKP DQIQILEAIF NSGMVNPPRE EIKRIRGQLE  60
EFGHVEDVNV FYWFQNRKAR VKRKRQLQNA EESESRAAKC ARPLSSSSSS LTSTTSTSTS  120
VQSQPVTIVN QAPSSSAGLV ISSFAAHHCN QQVNQKMSTT QYSNIQPIGA GGATESKGIL  180
NEGGVREDSI NIDNSVITVI VNDNPMQVPK EPINLGAFFG DDALLLDSSG HMVQI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4119538e-74JX411953.1 Picea abies WUSCHEL homeobox protein WOX8D (WOX8D) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLR9R8673e-81R9R867_PICAB; WUSCHEL homeobox protein WOX8D
TrEMBLR9R8D12e-81R9R8D1_PICAB; WUSCHEL homeobox protein WOX8B
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.11e-31homeobox-3