PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048913-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 195aa    MW: 21827.7 Da    PI: 6.0947
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048913-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.51.9e-42221221101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaC++lrr+C ++Cvlapyfp ++p+kfa vh++FGasn++++l+++  e+r+d++sslvyeA ar+rdPvyG++g++ +l+qql+ l+a+
  PSME_00048913-RA  22 PCAACRTLRRRCGDKCVLAPYFPPNDPQKFATVHRVFGASNIIRILQDVTSEHRDDTVSSLVYEATARLRDPVYGCAGTVCQLHQQLCDLQAQ 114
                       7******************************************************************************************** PP

            DUF260  94 lallkeel 101
                       la++++++
  PSME_00048913-RA 115 LATAQAQI 122
                       ***99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.50121122IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-4122119IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MWRQQIYKMS EGTPIRTKVA TPCAACRTLR RRCGDKCVLA PYFPPNDPQK FATVHRVFGA  60
SNIIRILQDV TSEHRDDTVS SLVYEATARL RDPVYGCAGT VCQLHQQLCD LQAQLATAQA  120
QILNLHCQQA NLMEFLIASN SSLGKGGETF DCDYDEPLQG SSWTDSDSPV SQVTDGEKDV  180
NALLQELFMC SRYWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-39121291118LOB family transfactor Ramosa2.1
5ly0_B5e-39121291118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251265.19e-59LOB domain-containing protein 1
SwissprotQ9LQR01e-50LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A2Z7BKX03e-58A0A2Z7BKX0_9LAMI; LOB domain-containing protein 11-like
STRINGSolyc11g072470.1.14e-58(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.13e-41LOB domain-containing protein 11