PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048927-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 172aa    MW: 19176.9 Da    PI: 6.5025
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048927-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.41.4e-3917114198
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       aCa+Ck++r+kC ++Cv+apyfp+e++ kf  vh++FG +nv+kll++l+ e+r +a++s+vyeA+ r+rdPv+G++g+i++l++++e+l+++
  PSME_00048927-RA  17 ACAVCKMQRKKCGENCVVAPYFPQEDHDKFLLVHRVFGKANVIKLLQDLSVEQRGEAVKSIVYEAQERVRDPVHGCFGIINDLHKKVEELQSK 109
                       7******************************************************************************************** PP

            DUF260  94 lallk 98 
                       la+++
  PSME_00048927-RA 110 LAAAE 114
                       *9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.12316117IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-3817114IPR004883Lateral organ boundaries, LOB
SuperFamilySSF1405708.76E-659139IPR033440Chromosome partition protein MukF, middle domain
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
ISRGVVLQMN NTLPTAACAV CKMQRKKCGE NCVVAPYFPQ EDHDKFLLVH RVFGKANVIK  60
LLQDLSVEQR GEAVKSIVYE AQERVRDPVH GCFGIINDLH KKVEELQSKL AAAEAGLAAN  120
MQSVQHAILI SASLNYHEAS GAAHEFNNAS LHDLDYDVDP LQPWEPLWTF KQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-311611710111LOB family transfactor Ramosa2.1
5ly0_B2e-311611710111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LQI96e-53B8LQI9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.14e-38LOB domain-containing protein 1