PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048932-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 286aa    MW: 32046.1 Da    PI: 9.6333
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048932-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox567e-18164216456
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       + +++k q   Lee F +nr p+ ++r++LA++l+L+  qV vWFqN+Ra+ k
  PSME_00048932-RA 164 KPRLSKGQYALLEESFSNNRLPTVNQRQDLATELKLPLHQVEVWFQNKRARTK 216
                       5568999********************************************98 PP
2HD-ZIP_I/II834.2e-27163249288
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                       +k rlsk q +lLEesF++++  + +++++la+eL+l  +qv+vWFqn+RARtk  q+E+d++ Lkr+ ++l++en+rL++e +e+r
  PSME_00048932-RA 163 NKPRLSKGQYALLEESFSNNRLPTVNQRQDLATELKLPLHQVEVWFQNKRARTKFNQTEMDFKLLKRHNQTLVTENRRLQQELQEIR 249
                       689**************6666667899********************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.406158218IPR001356Homeobox domain
SuperFamilySSF466892.95E-16159219IPR009057Homeodomain-like
SMARTSM003891.4E-12160222IPR001356Homeobox domain
CDDcd000862.44E-11162216No hitNo description
Gene3DG3DSA:1.10.10.603.0E-16163216IPR009057Homeodomain-like
PfamPF000463.7E-15164216IPR001356Homeobox domain
PROSITE patternPS000270193216IPR017970Homeobox, conserved site
SMARTSM003403.8E-10218261IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDQDCDTELR LGLNIGSARA SRTQDLECAS QRAVQGSSLQ LNLGSSAVLP ASRTLPLKKT  60
SHGIDGGSDK QRSPREAKAA FRQVPVSRRF DVNKFLVLSH HNEEAAAINV WSSNSTVDTR  120
AISSDSGYGM DFKRMQAAAE ELENDRACSR VHNEVEEEGA TKNKPRLSKG QYALLEESFS  180
NNRLPTVNQR QDLATELKLP LHQVEVWFQN KRARTKFNQT EMDFKLLKRH NQTLVTENRR  240
LQQELQEIRC PKLASPVVPR ATLIVCPSCH RIAAANNSRP FGWATP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NKN46e-68A9NKN4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47370.17e-33Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein