PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048958-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 559aa    MW: 62834.8 Da    PI: 7.9371
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048958-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-05211233223
                       EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        C+ Cg+ Fs+ + L++H+   H
  PSME_00048958-RA 211 ACSSCGQIFSNTEALEQHQAIkH 233
                       6******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.162210234IPR007087Zinc finger, C2H2
PROSITE patternPS000280210233IPR007087Zinc finger, C2H2
SuperFamilySSF563997.58E-14236436No hitNo description
Gene3DG3DSA:3.90.228.102.2E-13236453IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MDMQIAASFF LVPNVTSATT LTATKKRRTH EKSSSSSHDE SSWAFKFKKL VMCMLDGLQF  60
QKPASRRVAA ISKRSYYRRW IDCSGSGFCN IGDVVQGNTR VMHRSGKISS QAAATSTSSH  120
ESSCTCIQSS ECHNDLSRSN VHLERDTRSL NASTRRSKSD RFLKQQKRTG EILTREPYSS  180
MSFSRRWSAC YESQMIVDPI EALSFPTSIC ACSSCGQIFS NTEALEQHQA IKHAVSVLGK  240
EDSAHTVVEI IFQSSWLKKE NSFCKIERIL KIHNSQKTIN KFEEYRDMVK EKADNKLLKK  300
HPRCIADGNE LLRFHCTTFA CSLGMNALCP SLCNLPSCNI CHVIRNGFSA TPKSEMTGRA  360
KGSWIYTTAS SWKAHDRKQL LEEEEEEELA SKRRRKRKRA MLVCRVIAGC VQKSQDEDDF  420
IASGFDSIAG QADYAPSTDE DSEGEESEPE VPKEEEVNEE IVYTAETVME HPLDSENAGK  480
EIHTDNMQLM SLSLTGSKRA HESENSDSDK DKTPVQPSLE QVSKELIIAT PQQGGWIEVK  540
SKKKGKKGKL EDYYKIPNS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12529KRRTH
2392398RRRKRKR
3393398RRKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.12e-61C2H2-like zinc finger protein