PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048966-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 386aa    MW: 43229.6 Da    PI: 4.5192
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048966-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-12188233555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + + Er+RR ++N+++ +Lr+l+P       +K++Ka++++ A+ YI++L+
  PSME_00048966-RA 188 NIILERKRRGKLNHWLYTLRSLVPFI-----TKMDKASVVKDAITYIQHLE 233
                       5679*********************7.....6*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-17182248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.51183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.48E-13187237No hitNo description
PfamPF000101.8E-10188233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-15189250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-15189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MEAIVEGPFD YSAMNQLLPD FDPFVNMETI TLSNGLCETV QKQWMSGTDC TPWSTTIDSQ  60
YNGGDVISIN CVNVYAVEQH AERYINASVA MDDQLQDQWW KDEEEYAIFS TCLEVSHNQS  120
INALPDHLGA LSSREFDGQQ IESASCPENK CDLQNHSQRG NAYSEGSNNH SNGDIKSCKS  180
GSSAANKNII LERKRRGKLN HWLYTLRSLV PFITKMDKAS VVKDAITYIQ HLENQVKEIQ  240
TEIAALQSNN QSDCSLRVIS HEDLSVAEMI EDHSMNAEIP IQAPIMAAPE SEHAGQTVLQ  300
VDVCKIDGTR FRITLYCLKQ RYLLSQLMKA LESIQILEIR SSNIISLDGH IVNTVIAEIT  360
KEIEEAEGLK QLIMDTASNY GFLRGL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.13e-25FER-like regulator of iron uptake