PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00048969-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 423aa    MW: 46514.5 Da    PI: 6.577
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00048969-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.1e-08272314955
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       E+ RR+ri+s   +L +llP a      Kl+     ekA++YI++L+
  PSME_00048969-RA 272 EQMRRKRIKSLCTQLESLLPAA----PVKLDRCGLFEKAINYIRKLE 314
                       9********************7....39****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.13E-9260325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.94E-7261315No hitNo description
PROSITE profilePS5088812.239263313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-10265317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-5269319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-5272314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MHIAYLDSFT PGAAHKLSPI SSSPLACTSS PPVLSHCVHS ISTVEALSSV DTIPVVPIVS  60
NGVDGPVLSL STSPVSVGDD VSVPPVVANI DGVEVLPHSA PVVSNSSLAD LSILSLKSSG  120
ADFAVSVLPI STPILTVEVP QTRPSTSSLC APLGKEITSE HFVATLPPIV STSCAPASAS  180
SNSLGMKRPQ SCILIMASDC LFSYFYPVSR ALYSNVPQCD RQIDCQGTVS RKRPSEVDLA  240
DLQEYTDLQE KVWQDVDHMM KISSKESQLF SEQMRRKRIK SLCTQLESLL PAAPVKLDRC  300
GLFEKAINYI RKLEENMHQL KKKRDSILEI QSRKTAEENI EIKVALEFYG REAIINITSQ  360
REPRHMWRIL EELENHGLDV KTAQLFKGKV FVLVFFHVNF RDNISQEPAQ IQNSLECKLK  420
LTY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NYK81e-130A9NYK8_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-06bHLH family protein