PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049059-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 203aa    MW: 23121.8 Da    PI: 7.9828
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049059-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.18.7e-29105162259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYG+K vk+s++pr+Y+rC+ ++C vkk ver+a+d+ +v++ Y g+Hnhe
  PSME_00049059-RA 105 EDGYKWRKYGKKFVKNSPNPRNYFRCSDNNCGVKKTVERDARDKGIVITSYLGKHNHE 162
                       8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-3092164IPR003657WRKY domain
SuperFamilySSF1182902.62E-2696164IPR003657WRKY domain
PROSITE profilePS5081128.87499164IPR003657WRKY domain
SMARTSM007741.3E-30104163IPR003657WRKY domain
PfamPF031061.0E-22105162IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MVQTQQLQEP SGSHHINLGV EPFEPSDFLV SDEEFEHSCK SEHAGEPAYI FNTVKSGSSN  60
ETREPQEITI IVYVLNRSPN KSRKRKAERG AKYAFLTRSD TDILEDGYKW RKYGKKFVKN  120
SPNPRNYFRC SDNNCGVKKT VERDARDKGI VITSYLGKHN HESPSVIYYT LNPETLVQLP  180
LQTTGSPIFS SMNYVPGCSE QHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-23971651078Probable WRKY transcription factor 4
2lex_A3e-23971651078Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457906.17e-37PREDICTED: probable WRKY transcription factor 51
TrEMBLA0A0D6R4C94e-47A0A0D6R4C9_ARACU; Uncharacterized protein
STRINGXP_008457906.13e-36(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.15e-31WRKY DNA-binding protein 51