PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049224-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 202aa    MW: 21551.2 Da    PI: 9.9827
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049224-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.57.6e-06175200530
                       HHHHHHHHHHHHHHHHHHHHCTSCCC CS
               HLH   5 hnerErrRRdriNsafeeLrellPka 30 
                       h++ Er RR+ri +++  L+el+P++
  PSME_00049224-RA 175 HSIEERLRRERIAERMKALQELVPNS 200
                       8999********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.23170202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.4E-6171201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-5174201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.37E-4174202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MPNQVSQGIN ETNTSPGRSM VLQLSTGNPT ASQLLASMGN SPRGTVVMTW SPSTWGSCNG  60
SDGGMIPLPL SLSQAGKSGE MNETRSRDEI EASFKSANNA RDSKLGGLFP PFAGSPWGVR  120
PPSQNFHPQL GQVPMQGYGG MPQPQHQNPP PTGVGAAPPV RPRVRACCGQ ATDPHSIEER  180
LRRERIAERM KALQELVPNS NK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179184RLRRER
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1150430.0BT115043.1 Picea glauca clone GQ03607_N12 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006857186.25e-31transcription factor bHLH66
RefseqXP_011628047.15e-31transcription factor bHLH66
RefseqXP_020530898.15e-31transcription factor bHLH66
RefseqXP_020530899.15e-31transcription factor bHLH66
TrEMBLU5DE199e-30U5DE19_AMBTC; Uncharacterized protein
STRINGERN186531e-30(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.17e-08LJRHL1-like 3