PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049241-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 123aa    MW: 14283.5 Da    PI: 10.8381
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049241-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.82.9e-14654148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+eEd +l ++++ +G g  W+ I  + g++R++++c++rw++yl
  PSME_00049241-RA  6 RGAWTKEEDIILSEYIRFHGDGsGWTNIRPKTGLKRSGNSCRLRWLNYL 54
                      89******************99***********9**************7 PP
2Myb_DNA-binding57.92.4e-1860105148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ ++eE+el+++++++lG++ W++Ia +++ gRt++++k++w+++l
  PSME_00049241-RA  60 RGNISPEEEELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 105
                       7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.047154IPR017930Myb domain
SuperFamilySSF466898.61E-273101IPR009057Homeodomain-like
SMARTSM007174.9E-10556IPR001005SANT/Myb domain
PfamPF002492.6E-13654IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-20761IPR009057Homeodomain-like
CDDcd001673.35E-8854No hitNo description
PROSITE profilePS5129426.05355109IPR017930Myb domain
SMARTSM007178.9E-1759107IPR001005SANT/Myb domain
PfamPF002491.1E-1660105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-2662109IPR009057Homeodomain-like
CDDcd001672.96E-1264105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MEGLHRGAWT KEEDIILSEY IRFHGDGSGW TNIRPKTGLK RSGNSCRLRW LNYLLPDIKR  60
GNISPEEEEL IIRLHRLLGN RWSLIAGRLP GRTDNEIKNY WNTHLGKKVL SITNLIPIRG  120
RKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-2441095108B-MYB
1h8a_C6e-24410925128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018844495.11e-55PREDICTED: transcription factor MYB12-like isoform X2
SwissprotQ9S9K91e-47MYB3_ARATH; Transcription factor MYB3
TrEMBLA0A167V9014e-59A0A167V901_PICAB; Transcription factor MYB30
STRINGXP_008242211.11e-53(Prunus mume)
STRINGEMJ057451e-53(Prunus persica)
STRINGGLYMA13G16890.11e-53(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-40myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]