PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049251-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 302aa    MW: 34795.9 Da    PI: 9.8101
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049251-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH406.9e-13100153154
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++ +hn++Er+RR+++N  +e+Lr+llP +  + +kK+s  +i+    +YI +L
  PSME_00049251-RA 100 KKLSHNANERKRRKHLNALYENLRSLLPFSNVNMKKKVSNPAIVSGILKYIPHL 153
                       6789*************************66799999***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.78399153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-10100153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-9100158No hitNo description
SuperFamilySSF474591.22E-13100172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-11101168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-8105159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MNRFTMCPFA SGQIEPDYNI KSMGMAALRR PESFESQLIM EGSEYWREGV QYSYKFPSSM  60
TEYGEQLFAS EENVISNSYP TEKTYKKSTA LNLSEDVLTK KLSHNANERK RRKHLNALYE  120
NLRSLLPFSN VNMKKKVSNP AIVSGILKYI PHLRREIETL SRQRDELLSL IRISGQALMT  180
APAEYHPSQK LKNKLDFSET PKARSTEVSI FAGGQTLLLT VQTPHAAPLV FSRLFWLLEE  240
ERLDVINAST FISREEAWHN IQVKAMECRR AFDTRALRLK IMILFDRSGR HFGQQPSNCF  300
QG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04150.15e-18bHLH family protein