PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049266-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 333aa    MW: 37335.3 Da    PI: 8.0934
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049266-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-13109160154
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +++ hn++Er RR++++  ++eLr+llP++  +p++Kls   ++ ++ +YI +L
  PSME_00049266-RA 109 KKAFHNAVERHRRNKLKVLYSELRSLLPNP--NPKRKLSIPNTVGRVLKYIPEL 160
                       6789*************************6..5******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.643108160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-14108175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-11109174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-10109160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-9109165No hitNo description
SMARTSM003531.5E-9114166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSKETGNVAA ANYNPTNKME YPNSSLCNAA AAETDSQQPE RINIFWPAYW QQLDKQMQSG  60
SDNLTLKHNT QFVMHTHNHD PEQHLPVNSD QLQKLIDEDS VTNLPCSTKK AFHNAVERHR  120
RNKLKVLYSE LRSLLPNPNP KRKLSIPNTV GRVLKYIPEL RNQIEELGRK RAELLTATKR  180
ICNNSAVTSK SCTGASEQEF MNEFKHSPQE TLSSPINVTV NSSLGSSELL ITILACKTGF  240
SFSTLLLVLE KEGLDLLNAS TFLSQHGICH NLHLRMRSGE VESSNIIGTG RSEMNTNLEK  300
KLVTILCEKS LHPQVTGQTE TRDPVLAKME SNM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04150.14e-19bHLH family protein