PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049277-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 161aa    MW: 18864.9 Da    PI: 10.786
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049277-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.85.8e-192168148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+eEd++l ++v+++G+g W + +++ g++R++k+c++rw++yl
  PSME_00049277-RA 21 RGAWTAEEDLILCEYVRLHGNGGWQKLPQKAGLKRCGKSCRLRWRNYL 68
                      89*********************************************7 PP
2Myb_DNA-binding47.25.3e-1574119148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ + +E++l+++ +++lG++ W+ Ia +++ gRt++++k++w++++
  PSME_00049277-RA  74 RGNISYDEEDLIIRMHRLLGNR-WSMIAGRLP-GRTDNEIKNYWNSHM 119
                       788899****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-241371IPR009057Homeodomain-like
PROSITE profilePS5129422.9741672IPR017930Myb domain
SuperFamilySSF466892.28E-2820115IPR009057Homeodomain-like
SMARTSM007172.1E-132070IPR001005SANT/Myb domain
PfamPF002492.2E-172168IPR001005SANT/Myb domain
CDDcd001679.07E-102368No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2272121IPR009057Homeodomain-like
SMARTSM007172.4E-1273121IPR001005SANT/Myb domain
PROSITE profilePS5129416.78573123IPR017930Myb domain
PfamPF002499.4E-1374118IPR001005SANT/Myb domain
CDDcd001672.73E-980119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MRKKIFDMGR SRCCSKEVLN RGAWTAEEDL ILCEYVRLHG NGGWQKLPQK AGLKRCGKSC  60
RLRWRNYLRP DIKRGNISYD EEDLIIRMHR LLGNRWSMIA GRLPGRTDNE IKNYWNSHMH  120
QNGVQLQAKE QSLKKRPKSP PPFENHVSRA IPLKIKPNCS N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-251911925124MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132138LKKRPKS
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015954738.12e-63transcription factor MYB8-like
RefseqXP_022731886.15e-64transcription factor TT2-like
RefseqXP_025677071.12e-63transcription factor MYB8-like
SwissprotP102902e-59MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLA0A167V9011e-69A0A167V901_PICAB; Transcription factor MYB30
STRINGERN112227e-62(Amborella trichopoda)
STRINGcassava4.1_012592m5e-62(Manihot esculenta)
STRINGcassava4.1_015101m2e-62(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.14e-58myb domain protein 3
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  3. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  4. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  5. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  6. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  7. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]