PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00049292-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

TALE

Protein Properties

Length: 1036aa MW: 113525 Da PI: 7.2077

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00049292-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.3e-09	737	774	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ +qV++WF N R + PSME_00049292-RA 737 FEHflHPYPTDADKHMLARQTGLSRSQVSNWFINARVR 774 554459******************************88 PP
2	BELL	116.1	1.7e-37	601	670	3	72
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+q++++kLls+leeV++rY+qy+eq+q+v+ sFe +aglg+a+pYt+lAlka+SrhFrcL dai++q+ PSME_00049292-RA 601 FEIQRRRTKLLSMLEEVQRRYRQYCEQMQMVVTSFESIAGLGAATPYTALALKAMSRHFRCLIDAIKNQL 670 589****************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	4.0E-55	498	668	IPR006563	POX domain
Pfam	PF07526	3.6E-47	503	666	IPR006563	POX domain
PROSITE profile	PS50071	12.568	715	778	IPR001356	Homeobox domain
SMART	SM00389	1.8E-10	718	782	IPR001356	Homeobox domain
CDD	cd00086	6.45E-13	718	779	No hit	No description
SuperFamily	SSF46689	3.85E-17	720	785	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-28	721	784	IPR009057	Homeodomain-like
Pfam	PF05920	8.2E-19	735	774	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1036 aa Download sequence Send to blast
MSEGFDTGCL DSTILEHSFL RMNQLRSQAH VAQQSRREKL RVQQNPSSPQ IGTQTDASGF 60 SNYILHQAPQ SVITTEANNQ TRSRDSSRGY PGHPTQANTG DEMPMYDASM LSSEMYNFPT 120 GAELLGVPPK GIVLQQAPSE DGSERPSAMG AVSYSTFGHS NSNFSGSKTS MVPNLGNWKS 180 LNTPANSDWP VKFIHGLPNA HSSAYGGPNT IATPLVLSGG GLQTGVVKDG SLASSTNIHS 240 QADAMQLYLM NPAYAGYPEN SPPANMHPSN DTVANQGQES QKHLVEVPLQ FPNFQHNALP 300 MVAEVATSTV GSQGFCFAQL PSNLRESAQS QWPSGGNELV LMPSYGNIQN GQYLSPRLNN 360 AMTWGNRQAG SLTNSQWNQE PFVEGKVEDE FRTEQLSVGR DRSGQGLSLS LSSHQPSEMQ 420 LQQFEAMTGR TNVLQVATDA KGKSEELFNR QGTNGPGYFS SYSKDGIPGK AYGNAIQGGG 480 GGSTMVLQMN VGPLGPFTGY ASVLKSSKYL KPAQQLLDEF CNVGRGHQSS NMPKQKISKP 540 QGGWVDRSSG GGSVVQNSLD IKSDIGGKMG DSCAAASSTF VPGETPSESG MEQLAYSGDK 600 FEIQRRRTKL LSMLEEVQRR YRQYCEQMQM VVTSFESIAG LGAATPYTAL ALKAMSRHFR 660 CLIDAIKNQL RVTSKALGED SSLAGVSRGE TPRLRFIDQN LRQQRAVQHL GMLEQHAWRP 720 QRGLPERSVS VLRAWLFEHF LHPYPTDADK HMLARQTGLS RSQVSNWFIN ARVRLWKPMV 780 EEMYLQESKE SSEMDITLKR KGNDSRDKTE CHLGNEKNMN KHGKMMLDGG SDKQSASEGG 840 GSKFEHGGST SQTGQESSGT AMSMPLESQF RPGEKVDSMR EADMNANRNV RETQSLSSVN 900 VTTIGVDRRL EETHVCQNFD HGTKRYRNDD RSKLQGFENT IDFSSYNHSS AIGGRYSHDD 960 FTPRQFGSAG VSLTLGLRHS GGQEKYSNGL YLSRDDSAPD SNHHYNIHDT HDQGYGSGFD 1020 AQDMQFRKHV GSQLLH

Sequence ? help Back to Top

Protein Sequence Length: 1036 aa Download sequence Send to blast

MSEGFDTGCL DSTILEHSFL RMNQLRSQAH VAQQSRREKL RVQQNPSSPQ IGTQTDASGF  60
SNYILHQAPQ SVITTEANNQ TRSRDSSRGY PGHPTQANTG DEMPMYDASM LSSEMYNFPT  120
GAELLGVPPK GIVLQQAPSE DGSERPSAMG AVSYSTFGHS NSNFSGSKTS MVPNLGNWKS  180
LNTPANSDWP VKFIHGLPNA HSSAYGGPNT IATPLVLSGG GLQTGVVKDG SLASSTNIHS  240
QADAMQLYLM NPAYAGYPEN SPPANMHPSN DTVANQGQES QKHLVEVPLQ FPNFQHNALP  300
MVAEVATSTV GSQGFCFAQL PSNLRESAQS QWPSGGNELV LMPSYGNIQN GQYLSPRLNN  360
AMTWGNRQAG SLTNSQWNQE PFVEGKVEDE FRTEQLSVGR DRSGQGLSLS LSSHQPSEMQ  420
LQQFEAMTGR TNVLQVATDA KGKSEELFNR QGTNGPGYFS SYSKDGIPGK AYGNAIQGGG  480
GGSTMVLQMN VGPLGPFTGY ASVLKSSKYL KPAQQLLDEF CNVGRGHQSS NMPKQKISKP  540
QGGWVDRSSG GGSVVQNSLD IKSDIGGKMG DSCAAASSTF VPGETPSESG MEQLAYSGDK  600
FEIQRRRTKL LSMLEEVQRR YRQYCEQMQM VVTSFESIAG LGAATPYTAL ALKAMSRHFR  660
CLIDAIKNQL RVTSKALGED SSLAGVSRGE TPRLRFIDQN LRQQRAVQHL GMLEQHAWRP  720
QRGLPERSVS VLRAWLFEHF LHPYPTDADK HMLARQTGLS RSQVSNWFIN ARVRLWKPMV  780
EEMYLQESKE SSEMDITLKR KGNDSRDKTE CHLGNEKNMN KHGKMMLDGG SDKQSASEGG  840
GSKFEHGGST SQTGQESSGT AMSMPLESQF RPGEKVDSMR EADMNANRNV RETQSLSSVN  900
VTTIGVDRRL EETHVCQNFD HGTKRYRNDD RSKLQGFENT IDFSSYNHSS AIGGRYSHDD  960
FTPRQFGSAG VSLTLGLRHS GGQEKYSNGL YLSRDDSAPD SNHHYNIHDT HDQGYGSGFD  1020
AQDMQFRKHV GSQLLH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	7e-16	724	781	1	58	Homeobox protein Meis1
4xrs_B	7e-16	724	781	1	58	Homeobox protein Meis1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF678220	0.0	EF678220.1 Picea sitchensis clone WS0285_A17 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	Q7XA57	0.0	Q7XA57_GNEGN; Putative BEL1-like protein (Fragment)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	2e-99	BEL1-like homeodomain 4