PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00049435-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

HD-ZIP

Protein Properties

Length: 361aa MW: 39327.3 Da PI: 7.7

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00049435-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	38.4	2.1e-12	241	291	6	56
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ q Lee F knr +++++r++LA++l+L+ q v FqN+Ra+ k PSME_00049435-RA 241 RLSEGQYALLEESFSKNRLLTENQRQDLARELNLPLHQAEVGFQNKRARTK 291 578999*******************************************98 PP
2	HD-ZIP_I/II	79.1	7.3e-26	237	325	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekk rls+ q +lLEesF++++ L+ +++++lareL+l +q +v Fqn+RARtk ++E+d++ Lkr+ ++l +en rL++e +eLr + PSME_00049435-RA 237 EKKPRLSEGQYALLEESFSKNRLLTENQRQDLARELNLPLHQAEVGFQNKRARTKFNETEMDCNLLKRHNETLITENLRLQQELQELR-S 325 69*************************************************************************************9.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	13.119	233	293	IPR001356	Homeobox domain
SMART	SM00389	1.5E-4	236	297	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.7E-11	238	291	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.27E-11	238	301	IPR009057	Homeodomain-like
CDD	cd00086	5.64E-8	238	291	No hit	No description
Pfam	PF00046	9.6E-10	241	291	IPR001356	Homeobox domain
SMART	SM00340	1.7E-11	293	336	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MDQDCDTQLR LSLNISSARD CDTELHLGLN TSLGRASRTQ DLECVSPRAV QGSSLQLNLG 60 SSAVLPAPTT LPLKKTSAVQ GSSLQLNLGS SAVLSASGTL PLKKTSAVQG SSLKLNLGCS 120 AVLPASVTLP LKKTSPRIDG GSDEQRSPGE AKAAFRQVPV SRRFDLNKFL VLCHRNEEAA 180 AINLASSNST VDTWSAISSD SGYGMDVKRL QASTEELENE RACSRVHNDI DVEGATEKKP 240 RLSEGQYALL EESFSKNRLL TENQRQDLAR ELNLPLHQAE VGFQNKRART KFNETEMDCN 300 LLKRHNETLI TENLRLQQEL QELRSLKLAS PLVPTATLTV CPSCHRIAPG NNSRPFEWAT 360 P

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MDQDCDTQLR LSLNISSARD CDTELHLGLN TSLGRASRTQ DLECVSPRAV QGSSLQLNLG  60
SSAVLPAPTT LPLKKTSAVQ GSSLQLNLGS SAVLSASGTL PLKKTSAVQG SSLKLNLGCS  120
AVLPASVTLP LKKTSPRIDG GSDEQRSPGE AKAAFRQVPV SRRFDLNKFL VLCHRNEEAA  180
AINLASSNST VDTWSAISSD SGYGMDVKRL QASTEELENE RACSRVHNDI DVEGATEKKP  240
RLSEGQYALL EESFSKNRLL TENQRQDLAR ELNLPLHQAE VGFQNKRART KFNETEMDCN  300
LLKRHNETLI TENLRLQQEL QELRSLKLAS PLVPTATLTV CPSCHRIAPG NNSRPFEWAT  360
P

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9NKN4	3e-66	A9NKN4_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	4e-26	homeobox from Arabidopsis thaliana