PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049482-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 217aa    MW: 24927.8 Da    PI: 6.1422
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049482-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55.3e-161969155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +++kG+r +k +g+W +eIr p++   r++++lg++ tae+Aa a++aa  +l+g
  PSME_00049482-RA 19 PKFKGIRLRK-WGSWGSEIRMPKT---RAKIWLGNYKTAEQAAHAYDAAVYCLRG 69
                      79******99.**********965...4*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.5E-91969IPR001471AP2/ERF domain
CDDcd000184.09E-251979No hitNo description
PROSITE profilePS5103220.1392077IPR001471AP2/ERF domain
SMARTSM003803.6E-262083IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-272079IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-182079IPR016177DNA-binding domain
PRINTSPR003675.0E-72132IPR001471AP2/ERF domain
PRINTSPR003675.0E-74359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEKDPEEYQT HEHSRQKLPK FKGIRLRKWG SWGSEIRMPK TRAKIWLGNY KTAEQAAHAY  60
DAAVYCLRGP NANFNFPDSV PAIPSASSLS RQQIQAVAAK YALDQIPSTT PSLHNDNNGA  120
RKTEVSLASP SRSSSVSERK LWSESQQISE ERVFWETLFD SRECVSFQKF PSIDDRSALE  180
FNFDIFPSID DNSVLRFIPS LQEEEQEKYI SVDLWNF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ADJ92e-61D5ADJ9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.17e-35ERF family protein