PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049496-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 285aa    MW: 31574.3 Da    PI: 6.7895
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049496-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.22.9e-13173215754
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++Er+RR+++N+ +  Lr l+P+      +K++K +i+  A++YI+sL
  PSME_00049496-RA 173 AAERKRRRKVNELLMSLRALVPNI-----TKMDKLSIVSDAIDYIQSL 215
                       79*********************7.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.656166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-16171233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-15172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-11173215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-13173231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.25E-13173220No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGISSNSIDP LHTLLGMESF GLDDFEESLF TPSSESLGLS GVESSGSTTI NMDSILESED  60
RWSLKSLQCS SQSPYRWTNL REGNLQPLSS NENYGPTADH SYTPNKNVQN PEPASAPCNI  120
VVKDIGRRSK RNCSSMLITF GHNEGHYADK VTNVDKRGQG SPPNVSWASR NLAAERKRRR  180
KVNELLMSLR ALVPNITKMD KLSIVSDAID YIQSLHKQIK EREVSIPALR SNKAQQSSST  240
RELISGNTTG SVDEGDYEEK PIKSHAQQGF KIIEVSLDRL FLVIC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175179RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.34e-16bHLH family protein