PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00049501-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 273aa    MW: 31104.2 Da    PI: 10.032
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00049501-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.3e-30145203259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       dDg++WrKYGqK+ ++++ prsYYrC++a gCpvkk+v+r+a+dp ++++tYeg+H+h+
  PSME_00049501-RA 145 DDGCQWRKYGQKMTRNNQRPRSYYRCAMApGCPVKKQVQRCAQDPAILITTYEGKHTHS 203
                       8***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-33132203IPR003657WRKY domain
SuperFamilySSF1182902.88E-27136204IPR003657WRKY domain
PROSITE profilePS5081126.67139205IPR003657WRKY domain
SMARTSM007742.9E-36144204IPR003657WRKY domain
PfamPF031062.3E-26145202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MLNCVSCRYN HLQEHIRPML QQRKGFDLGD QIFYRDHESE DILWRRSINV DSSSTVSHQF  60
DQYWDSREQG GEKEKKNVKF VDDQQMPSKN SKKSKNRMIN SSSGEMEESP NKKPHVMNKV  120
FGQHTAGAAK RIVSVQTKSE ASVIDDGCQW RKYGQKMTRN NQRPRSYYRC AMAPGCPVKK  180
QVQRCAQDPA ILITTYEGKH THSLSPLAMA SMHASSSRLI SQELNRTISV ADNQFISFST  240
AIAKISTSSR IPTITLDLIN NRPDRAGLQS LHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-23135204876Probable WRKY transcription factor 4
2lex_A3e-23135204876Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9XEC37e-39WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A482CVK93e-78A0A482CVK9_9SPER; WRKY164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.13e-41WRKY family protein